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I know it's an old product now, but I'm working on updates to a project that was originally developed on FC5 and I decided to stick with it rather than move it to FC7.
Anyway, using a PIC 18F66K80, I'm not able to select RA5 as an input (connecting to a switch) as it is missing from the select list.
It appears to be defined in the .fcd file on pin 34.

Hello,

It looks like this line in the .fcd definition file may be the cause of the problem.
Which equates to 0b11001111.

Try changing this to
Which equates to 0b11101111.

Hopefully this should solve the problem.

Yep, that appears to have done the trick - thanks.